Tyck till om SwePub Sök här!
WFRF:(Heutink P)
Search: WFRF:(Heutink P) > (2015-2019) > (2017) > Okada Hatakeyama M > Noguchi S > FANTOM5 CAGE profil...
- 1 of 1
- Previous record
- Next record
- To hitlist
FANTOM5 CAGE profiles of human and mouse samples
- Noguchi, S (author)
- Arakawa, T (author)
- Fukuda, S (author)
- show more...
- Furuno, M (author)
- Hasegawa, A (author)
- Hori, F (author)
- Ishikawa-Kato, S (author)
- Kaida, K (author)
- Kaiho, A (author)
- Kanamori-Katayama, M (author)
- Kawashima, T (author)
- Kojima, M (author)
- Kubosaki, A (author)
- Manabe, RI (author)
- Murata, M (author)
- Nagao-Sato, S (author)
- Nakazato, K (author)
- Ninomiya, N (author)
- Nishiyori-Sueki, H (author)
- Noma, S (author)
- Saijyo, E (author)
- Saka, A (author)
- Sakai, M (author)
- Simon, C (author)
- Suzuki, N (author)
- Tagami, M (author)
- Watanabe, S (author)
- Yoshida, S (author)
- Axton, RA (author)
- Babina, M (author)
- Baillie, JK (author)
- Barnett, TC (author)
- Beckhouse, AG (author)
- Blumenthal, A (author)
- Bodega, B (author)
- Bonetti, A (author)
- Briggs, J (author)
- Brombacher, F (author)
- Carlisle, AJ (author)
- Clevers, HC (author)
- Davis, CA (author)
- Detmar, M (author)
- Dohi, T (author)
- Edge, ASB (author)
- Edinger, M (author)
- Ehrlund, A (author)
- Endoh, M (author)
- Enomoto, H (author)
- Eslami, A (author)
- Fagiolini, M (author)
- Fairbairn, L (author)
- Farach-Carson, MC (author)
- Faulkner, GJ (author)
- Ferrai, C (author)
- Fisher, ME (author)
- Forrester, LM (author)
- Fujita, R (author)
- Furusawa, J (author)
- Geijtenbeek, TB (author)
- Gingeras, T (author)
- Goldowitz, D (author)
- Guhl, S (author)
- Guler, R (author)
- Gustincich, S (author)
- Ha, TJ (author)
- Hamaguchi, M (author)
- Hara, M (author)
- Hasegawa, Y (author)
- Herlyn, M (author)
- Heutink, P (author)
- Hitchens, KJ (author)
- Hume, DA (author)
- Ikawa, T (author)
- Ishizu, Y (author)
- Kai, C (author)
- Kawamoto, H (author)
- Kawamura, YI (author)
- Kempfle, JS (author)
- Kenna, TJ (author)
- Khachigian, LM (author)
- Kitamura, T (author)
- Klein, S (author)
- Klinken, SP (author)
- Knox, AJ (author)
- Kojima, S (author)
- Koseki, H (author)
- Koyasu, S (author)
- Lee, W (author)
- Mackay-sim, A (author)
- Mizuno, Y (author)
- Morikawa, H (author)
- Morimoto, M (author)
- Moro, K (author)
- Morris, KJ (author)
- Motohashi, H (author)
- Mummery, CL (author)
- Nakachi, Y (author)
- Nakahara, F (author)
- Nakamura, T (author)
- Nakamura, Y (author)
- Nozaki, T (author)
- Ogishima, S (author)
- Ohkura, N (author)
- Ohno, H (author)
- Ohshima, M (author)
- Okada-Hatakeyama, M (author)
- Okazaki, Y (author)
- Orlando, V (author)
- Ovchinnikov, DA (author)
- Passier, R (author)
- Patrikakis, M (author)
- Pombo, A (author)
- Pradhan-Bhatt, S (author)
- Qin, XY (author)
- Rehli, M (author)
- Rizzu, P (author)
- Roy, S (author)
- Sajantila, A (author)
- Sakaguchi, S (author)
- Sato, H (author)
- Satoh, H (author)
- Savvi, S (author)
- Saxena, A (author)
- Schmidl, C (author)
- Schneider, C (author)
- Schulze-Tanzil, GG (author)
- Schwegmann, A (author)
- Sheng, GJ (author)
- Shin, JW (author)
- Sugiyama, D (author)
- Sugiyama, T (author)
- Summers, KM (author)
- Takahashi, N (author)
- Takai, J (author)
- Tanaka, H (author)
- Tatsukawa, H (author)
- Tomoiu, A (author)
- Toyoda, H (author)
- van de Wetering, M (author)
- van den Berg, LM (author)
- Verardo, R (author)
- Vijayan, D (author)
- Wells, CA (author)
- Winteringham, LN (author)
- Wolvetang, E (author)
- Yamaguchi, Y (author)
- Yamamoto, M (author)
- Yanagi-Mizuochi, C (author)
- Yoneda, M (author)
- Yonekura, Y (author)
- Zhang, PG (author)
- Zucchelli, S (author)
- Abugessaisa, I (author)
- Arner, E (author)
- Harshbarger, J (author)
- Kondo, A (author)
- Lassmann, T (author)
- Lizio, M (author)
- Sahin, S (author)
- Sengstag, T (author)
- Severin, J (author)
- Shimoji, H (author)
- Suzuki, M (author)
- Suzuki, H (author)
- Kawai, J (author)
- Kondo, N (author)
- Itoh, M (author)
- Daub, CO (author)
- Kasukawa, T (author)
- Kawaji, H (author)
- Carninci, P (author)
- Forrest, ARR (author)
- Hayashizaki, Y (author)
- show less...
- (creator_code:org_t)
- 2017-08-29
- 2017
- English.
- In: Scientific data. - : Springer Science and Business Media LLC. - 2052-4463. ; 4, s. 170112-
- Journal article (peer-reviewed)
Abstract
Subject headings
Close
- In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consisting of a variety of primary cells, tissues, cell lines, and time series samples during cell activation and development, were subjected to a uniform pipeline of CAGE data production. The analysis pipeline started by measuring RNA extracts to assess their quality, and continued to CAGE library production by using a robotic or a manual workflow, single molecule sequencing, and computational processing to generate frequencies of transcription initiation. Resulting data represents the consequence of transcriptional regulation in each analyzed state of mammalian cells. Non-overlapping peaks over the CAGE profiles, approximately 200,000 and 150,000 peaks for the human and mouse genomes, were identified and annotated to provide precise location of known promoters as well as novel ones, and to quantify their activities.
Subject headings
- MEDICIN OCH HÄLSOVETENSKAP -- Medicinska och farmaceutiska grundvetenskaper -- Medicinsk genetik (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Basic Medicine -- Medical Genetics (hsv//eng)
- NATURVETENSKAP -- Biologi -- Bioinformatik och systembiologi (hsv//swe)
- NATURAL SCIENCES -- Biological Sciences -- Bioinformatics and Systems Biology (hsv//eng)
- MEDICIN OCH HÄLSOVETENSKAP -- Medicinska och farmaceutiska grundvetenskaper -- Cell- och molekylärbiologi (hsv//swe)
- MEDICAL AND HEALTH SCIENCES -- Basic Medicine -- Cell and Molecular Biology (hsv//eng)
Publication and Content Type
- ref (subject category)
- art (subject category)
Find in a library
- Scientific data (Search for host publication in LIBRIS)
To the university's database
- 1 of 1
- Previous record
- Next record
- To hitlist
Find more in SwePub
- By the author/editor
- Noguchi, S
- Arakawa, T
- Fukuda, S
- Furuno, M
- Hasegawa, A
- Hori, F
- show more...
- Ishikawa-Kato, S
- Kaida, K
- Kaiho, A
- Kanamori-Katayam ...
- Kawashima, T
- Kojima, M
- Kubosaki, A
- Manabe, RI
- Murata, M
- Nagao-Sato, S
- Nakazato, K
- Ninomiya, N
- Nishiyori-Sueki, ...
- Noma, S
- Saijyo, E
- Saka, A
- Sakai, M
- Simon, C
- Suzuki, N
- Tagami, M
- Watanabe, S
- Yoshida, S
- Arner, P
- Axton, RA
- Babina, M
- Baillie, JK
- Barnett, TC
- Beckhouse, AG
- Blumenthal, A
- Bodega, B
- Bonetti, A
- Briggs, J
- Brombacher, F
- Carlisle, AJ
- Clevers, HC
- Davis, CA
- Detmar, M
- Dohi, T
- Edge, ASB
- Edinger, M
- Ehrlund, A
- Ekwall, K
- Endoh, M
- Enomoto, H
- Eslami, A
- Fagiolini, M
- Fairbairn, L
- Farach-Carson, M ...
- Faulkner, GJ
- Ferrai, C
- Fisher, ME
- Forrester, LM
- Fujita, R
- Furusawa, J
- Geijtenbeek, TB
- Gingeras, T
- Goldowitz, D
- Guhl, S
- Guler, R
- Gustincich, S
- Ha, TJ
- Hamaguchi, M
- Hara, M
- Hasegawa, Y
- Herlyn, M
- Heutink, P
- Hitchens, KJ
- Hume, DA
- Ikawa, T
- Ishizu, Y
- Kai, C
- Kawamoto, H
- Kawamura, YI
- Kempfle, JS
- Kenna, TJ
- Kere, J
- Khachigian, LM
- Kitamura, T
- Klein, S
- Klinken, SP
- Knox, AJ
- Kojima, S
- Koseki, H
- Koyasu, S
- Lee, W
- Lennartsson, A
- Mackay-sim, A
- Mejhert, N
- Mizuno, Y
- Morikawa, H
- Morimoto, M
- Moro, K
- Morris, KJ
- Motohashi, H
- Mummery, CL
- Nakachi, Y
- Nakahara, F
- Nakamura, T
- Nakamura, Y
- Nozaki, T
- Ogishima, S
- Ohkura, N
- Ohno, H
- Ohshima, M
- Okada-Hatakeyama ...
- Okazaki, Y
- Orlando, V
- Ovchinnikov, DA
- Passier, R
- Patrikakis, M
- Pombo, A
- Pradhan-Bhatt, S
- Qin, XY
- Rehli, M
- Rizzu, P
- Roy, S
- Sajantila, A
- Sakaguchi, S
- Sato, H
- Satoh, H
- Savvi, S
- Saxena, A
- Schmidl, C
- Schneider, C
- Schulze-Tanzil, ...
- Schwegmann, A
- Sheng, GJ
- Shin, JW
- Sugiyama, D
- Sugiyama, T
- Summers, KM
- Takahashi, N
- Takai, J
- Tanaka, H
- Tatsukawa, H
- Tomoiu, A
- Toyoda, H
- van de Wetering, ...
- van den Berg, LM
- Verardo, R
- Vijayan, D
- Wells, CA
- Winteringham, LN
- Wolvetang, E
- Yamaguchi, Y
- Yamamoto, M
- Yanagi-Mizuochi, ...
- Yoneda, M
- Yonekura, Y
- Zhang, PG
- Zucchelli, S
- Abugessaisa, I
- Arner, E
- Harshbarger, J
- Kondo, A
- Lassmann, T
- Lizio, M
- Sahin, S
- Sengstag, T
- Severin, J
- Shimoji, H
- Suzuki, M
- Suzuki, H
- Kawai, J
- Kondo, N
- Itoh, M
- Daub, CO
- Kasukawa, T
- Kawaji, H
- Carninci, P
- Forrest, ARR
- Hayashizaki, Y
- show less...
- About the subject
-
- MEDICAL AND HEALTH SCIENCES
- MEDICAL AND HEAL ...
- and Basic Medicine
- and Medical Genetics
-
- NATURAL SCIENCES
- NATURAL SCIENCES
- and Biological Scien ...
- and Bioinformatics a ...
-
- MEDICAL AND HEALTH SCIENCES
- MEDICAL AND HEAL ...
- and Basic Medicine
- and Cell and Molecul ...
- Articles in the publication
- Scientific data
- By the university
- Karolinska Institutet
Search outside SwePub
- Extend your search to:
- Google Book Search
- Google Scholar
Kungliga biblioteket hanterar dina personuppgifter i enlighet med EU:s dataskyddsförordning (2018), GDPR. Läs mer om hur det funkar här.
Så här hanterar KB dina uppgifter vid användning av denna tjänst.
- Copyright © LIBRIS - National Library Systems
- LIBRIS.kb.se
